SLE340 - Genomes and Bioinformatics
Unit details
| Year: | 2022 unit information |
|---|---|
| Important Update: | Unit delivery will be in line with the most current COVIDSafe health guidelines. We continue to tailor learning experiences for each unit to achieve the best possible mix of online and on-campus activities that successfully blend our approaches to learning, working and research. Please check your unit sites for announcements and updates. Last updated: 4 March 2022 |
| Enrolment modes: | Trimester 1: Burwood (Melbourne), Waurn Ponds (Geelong) |
| Credit point(s): | 1 |
| EFTSL value: | 0.125 |
| Unit Chair: | Trimester 1: Beata Ujvari |
| Prerequisite: | SLE254 |
| Corequisite: | Nil |
| Incompatible with: | Nil |
| Typical study commitment: | Students will on average spend 150 hours over the teaching period undertaking the teaching, learning and assessment activities for this unit. |
| Scheduled learning activities - campus: | 2 x 1 hour online classes per week; 1 x 1 hour seminar per week, 5 x 3 hour practicals per trimester. |
Content
Topics will include the theory and practise of Bioinformatics. This will include the analysis of sequence data using databases and the analysis of phylogenetic and population genetic datasets. In addition, the unit will cover the process of molecular evolution and the application of this knowledge in understanding how genomes evolve. This genomic evolution will be discussed in relation to the resulting evolution in developmental processes. Molecular markers and their use in genetic mapping of both single and multiple genes that contribute to the production of traits and their use examined in phylogenetic reconstruction and population genetics will be discussed. Students will learn about high throughput next generation sequencing methods and genome assembly and annotation. Additionally, students will develop laboratory techniques/skills relevant to bioinformatics, in a group environment, and ascertain how research projects are undertaken in their discipline.
| ULO | These are the Learning Outcomes (ULO) for this unit. At the completion of this unit, successful students can: | Deakin Graduate Learning Outcomes |
|---|---|---|
| ULO1 | Develop an understanding of Bioinformatics analysis methods and processes and to be able to practically apply that knowledge. | GLO1: Discipline-specific knowledge and capabilities |
| ULO2 | Understand the molecular evolutionary process and to recognise the signatures of that process. | GLO1: Discipline-specific knowledge and capabilities |
| ULO3 | Appreciate all of the varied applications of molecular biology and bioinformatics. | GLO1: Discipline-specific knowledge and capabilities |
| ULO4 | Develop the theoretical understanding of phylogenetic reconstruction and evolutionary developmental process. | GLO1: Discipline-specific knowledge and capabilities |
| ULO5 | Develop collaborative and practical skills through teamwork in laboratory and computer based sessions. | GLO1: Discipline-specific knowledge and capabilities |
These Unit Learning Outcomes are applicable for all teaching periods throughout the year
Assessment
| Assessment Description | Student output | Grading and weighting (% total mark for unit) | Indicative due week |
|---|---|---|---|
| Class test | 1-hour in-class test | 25% | Week 5 |
| Individual assignment | Written assignment (1,500-word maximum) | 15% | Week 8 |
| Group oral presentation | In-class 15-minute collaborative presentation | 15% | Weeks 10 and 11 |
| Examination | 2-hour written examination | 45% | Examination period |
The assessment due weeks provided may change. The Unit Chair will clarify the exact assessment requirements, including the due date, at the start of the teaching period.
Hurdle requirement
In order to obtain a pass in this unit student must achieve 50% in the practical and presentation sessions.
Learning Resource
The texts and reading list for the unit can be found on the University Library via the link below: SLE340 Note: Select the relevant trimester reading list. Please note that a future teaching period's reading list may not be available until a month prior to the start of that teaching period so you may wish to use the relevant trimester's prior year reading list as a guide only.
Unit Fee Information
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